5FYB: Crystal structure of the catalytic domain of human JARID1B in complex with MC1648

PDB ID: 5FYBDownload
MMDB ID: 148983
PDB Deposition Date: 2016/3/5
Updated in MMDB: 2017/04
Experimental Method:
x-ray diffraction
Resolution: 1.87  Å
Source Organism:
Similar Structures:
Biological Unit for 5FYB: monomeric; determined by author and by software (PISA)
Molecular Components in 5FYB
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 5B, Lysine-specific Demethylase 5B
(Gene symbol: KDM5B)
Molecule annotation
Chemicals and Non-standard biopolymers (28 molecules)
1
2
ZINC IONZINC ION
2
4
MANGANESE (II) IONMANGANESE (II) ION
3
2
N-hydroxy-3-[(6-oxo-4-phenyl-1,6-dihydropyrimidin-2-yl)sulfanyl]propanamideN-hydroxy-3-[(6-oxo-4-phenyl-1,6-dihydropyrimidin-2-yl)sulfanyl]propanamide
4
16
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
4
DIMETHYL SULFOXIDEDIMETHYL SULFOXIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303