5FPB: Crystal structure of human KDM4D in complex with 2-1H-pyrazol-4-yloxy- 3H,4H-pyrido-3,4-d-pyrimidin-4-one

PDB ID: 5FPBDownload
MMDB ID: 136074
PDB Deposition Date: 2015/11/27
Updated in MMDB: 2024/05
Experimental Method:
x-ray diffraction
Resolution: 1.91  Å
Source Organism:
Similar Structures:
Biological Unit for 5FPB: monomeric; determined by author and by software (PISA)
Molecular Components in 5FPB
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 4D
(Gene symbol: KDM4D)
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
1
ZINC IONZINC ION
2
1
COBALT (II) IONCOBALT (II) ION
3
1
2-(1H-pyrazol-4-yloxy)-3H-pyrido[3,4-d]pyrimidin-4-one2-(1H-pyrazol-4-yloxy)-3H-pyrido[3,4-d]pyrimidin-4-one
4
7
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303