5F9O: Crystal structure of broadly neutralizing VH1-46 germline-derived CD4-binding site-directed antibody CH235.09 in complex with HIV-1 clade A/E 93TH057 gp120

PDB ID: 5F9ODownload
MMDB ID: 137510
PDB Deposition Date: 2015/12/10
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 1.86  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 5F9O: trimeric; determined by author and by software (PISA)
Molecular Components in 5F9O
Label Count Molecule
Proteins (3 molecules)
1
Clade A/E 93th057 Hiv-1 Gp120 Core
Molecule annotation
1
Ch235.9 Heavy Chain
Molecule annotation
1
Ch235.09 Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
12
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
2
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
1
POLYETHYLENE GLYCOL (N=34)POLYETHYLENE GLYCOL (N=34)
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303