5F9D: Blood group antigen binding adhesin BabA of Helicobacter pylori strain P436 in complex with Lewis b blood group B heptasaccharide

PDB ID: 5F9DDownload
MMDB ID: 135822
PDB Deposition Date: 2015/12/9
Updated in MMDB: 2024/01
Experimental Method:
x-ray diffraction
Resolution: 2.59  Å
Source Organism:
Lama glama▼
Similar Structures:
Biological Unit for 5F9D: dimeric; determined by author and by software (PISA)
Molecular Components in 5F9D
Label Count Molecule
Proteins (2 molecules)
1
Adhesin Binding Fucosylated Histo-blood Group Antigen,adhesin,adhesin Binding Fucosylated Histo-blood Group Antigen
Molecule annotation
1
Nanobody Nb-er19
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
1
beta-D-glucopyranosebeta-D-glucopyranose
2
2
beta-D-galactopyranosebeta-D-galactopyranose
3
1
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
4
2
alpha-L-fucopyranosealpha-L-fucopyranose
5
1
alpha-D-galactopyranosealpha-D-galactopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303