5F8A: Crystal structure of the ternary EcoRV-DNA-Lu complex with uncleaved DNA substrate. Lanthanide binding to EcoRV-DNA complex inhibits cleavage

PDB ID: 5F8ADownload
MMDB ID: 144671
PDB Deposition Date: 2015/12/9
Updated in MMDB: 2016/12
Experimental Method:
x-ray diffraction
Resolution: 1.76  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5F8A: tetrameric; determined by author and by software (PISA)
Molecular Components in 5F8A
Label Count Molecule
Proteins (2 molecules)
2
Type-2 Restriction Enzyme Ecorv
Molecule annotation
Nucleotides(2 molecules)
2
DNA (5'-d(*ap*ap*ap*gp*ap*tp*ap*tp*cp*tp*tp*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
2
LUTETIUM (III) IONLUTETIUM (III) ION
2
2
SODIUM IONSODIUM ION
3
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303