5F7Y: Blood group antigen binding adhesin BabA of Helicobacter pylori strain 17875 in complex with blood group A type-1 hexasaccharide

PDB ID: 5F7YDownload
MMDB ID: 135816
PDB Deposition Date: 2015/12/8
Updated in MMDB: 2024/01
Experimental Method:
x-ray diffraction
Resolution: 2.44  Å
Source Organism:
Lama glama▼
Similar Structures:
Biological Unit for 5F7Y: dimeric; determined by author and by software (PISA)
Molecular Components in 5F7Y
Label Count Molecule
Proteins (2 molecules)
1
Adhesin Binding Fucosylated Histo-blood Group Antigen
Molecule annotation
1
Nanobody Nb-er19
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
1
alpha-D-glucopyranosealpha-D-glucopyranose
2
1
beta-D-galactopyranosebeta-D-galactopyranose
3
1
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
4
1
alpha-L-fucopyranosealpha-L-fucopyranose
5
1
2-acetamido-2-deoxy-alpha-D-galactopyranose2-acetamido-2-deoxy-alpha-D-galactopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303