5F5C: Crystal Structure of human JMJD2D complexed with KDOPP7

PDB ID: 5F5CDownload
MMDB ID: 135222
PDB Deposition Date: 2015/12/4
Updated in MMDB: 2015/12
Experimental Method:
x-ray diffraction
Resolution: 1.88  Å
Source Organism:
Similar Structures:
Biological Unit for 5F5C: monomeric; determined by software (PISA)
Molecular Components in 5F5C
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 4D
(Gene symbol: KDM4D)
Molecule annotation
Chemicals and Non-standard biopolymers (11 molecules)
1
1
ZINC IONZINC ION
2
1
NICKEL (II) IONNICKEL (II) ION
3
5
1,2-ETHANEDIOL1,2-ETHANEDIOL
4
3
SULFATE IONSULFATE ION
5
1
8-[[(phenylmethyl)amino]methyl]-1~{H}-pyrido[3,4-d]pyrimidin-4-one8-[[(phenylmethyl)amino]methyl]-1~{H}-pyrido[3,4-d]pyrimidin-4-one
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303