5EXD: Crystal structure of oxalate oxidoreductase from Moorella thermoacetica bound with carboxy-di-oxido-methyl-TPP (COOM-TPP) intermediate

PDB ID: 5EXDDownload
MMDB ID: 135213
PDB Deposition Date: 2015/11/23
Updated in MMDB: 2015/12
Experimental Method:
x-ray diffraction
Resolution: 2.5  Å
Source Organism:
Similar Structures:
Biological Unit for 5EXD: hexameric; determined by author and by software (PISA)
Molecular Components in 5EXD
Label Count Molecule
Proteins (6 molecules)
2
Oxalate Oxidoreductase Subunit Alpha
Molecule annotation
2
Oxalate Oxidoreductase Subunit Delta
Molecule annotation
2
Oxalate Oxidoreductase Subunit Beta
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
6
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
2
1
THIAMINE DIPHOSPHATETHIAMINE DIPHOSPHATE
3
2
MAGNESIUM IONMAGNESIUM ION
4
1
[2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-[1,1,2-tris(oxidanyl)-2-oxidanylidene-ethyl]-1,3-thiazol-3-ium-5-yl]ethoxy-oxidanyl-phosphoryl] hydrogen phosphate[2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-[1,1,2-tris(oxidanyl)-2-oxidanylidene-ethyl]-1,3-thiazol-3-ium-5-yl]ethoxy-oxidanyl-phosphoryl] hydrogen phosphate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303