5EKD: Human mitochondrial tryptophanyl-tRNA synthetase bound by indolmycin and Mn*ATP

PDB ID: 5EKDDownload
MMDB ID: 144909
PDB Deposition Date: 2015/11/3
Updated in MMDB: 2016/12
Experimental Method:
x-ray diffraction
Resolution: 1.82  Å
Source Organism:
Similar Structures:
Biological Unit for 5EKD: dimeric; determined by author and by software (PISA)
Molecular Components in 5EKD
Label Count Molecule
Proteins (2 molecules)
2
Tryptophan--trna Ligase, Mitochondrial
(Gene symbol: WARS2)
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
2
(5S)-5-[(1R)-1-(1H-indol-3-yl)ethyl]-2-(methylamino)-1,3-oxazol-4(5H)-one(5S)-5-[(1R)-1-(1H-indol-3-yl)ethyl]-2-(methylamino)-1,3-oxazol-4(5H)-one
2
2
ADENOSINE-5'-TRIPHOSPHATEADENOSINE-5'-TRIPHOSPHATE
3
4
MANGANESE (II) IONMANGANESE (II) ION
4
2
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303