5EFO: X-ray structure uridine phosphorylase from Vibrio cholerae in complex with cytidine and cytosine at 1.63A

PDB ID: 5EFODownload
MMDB ID: 144645
PDB Deposition Date: 2015/10/24
Updated in MMDB: 2016/11
Experimental Method:
x-ray diffraction
Resolution: 1.63  Å
Source Organism:
Similar Structures:
Biological Unit for 5EFO: hexameric; determined by author and by software (PISA)
Molecular Components in 5EFO
Label Count Molecule
Proteins (6 molecules)
6
Uridine Phosphorylase
Molecule annotation
Chemicals and Non-standard biopolymers (20 molecules)
1
3
SODIUM IONSODIUM ION
2
6
6-AMINOPYRIMIDIN-2(1H)-ONE6-AMINOPYRIMIDIN-2(1H)-ONE
3
1
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
4
4
GLYCEROLGLYCEROL
5
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
6
3
1,2-ETHANEDIOL1,2-ETHANEDIOL
7
2
4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303