5EFN: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 (H574A) in complex with histone H4 Lys6 tripeptide substrate

PDB ID: 5EFNDownload
MMDB ID: 141304
PDB Deposition Date: 2015/10/24
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.804  Å
Source Organism:
Homo sapiens▼
Similar Structures:
Biological Unit for 5EFN: dimeric; determined by author
Molecular Components in 5EFN
Label Count Molecule
Proteins (2 molecules)
1
Hdac6 Protein
Molecule annotation
1
Histone H4 Tripeptide
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
1
ZINC IONZINC ION
2
2
POTASSIUM IONPOTASSIUM ION
3
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
4
1
7-AMINO-4-METHYL-CHROMEN-2-ONE7-AMINO-4-METHYL-CHROMEN-2-ONE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303