5EFJ: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with HC toxin

PDB ID: 5EFJDownload
MMDB ID: 141302
PDB Deposition Date: 2015/10/23
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.73  Å
Source Organism:
Similar Structures:
Biological Unit for 5EFJ: dimeric; determined by author and by software (PISA)
Molecular Components in 5EFJ
Label Count Molecule
Protein (1 molecule)
1
Hdac6 Protein
(Gene symbol: hdac6)
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
F
1
HC toxin
1
1
ZINC IONZINC ION
2
2
POTASSIUM IONPOTASSIUM ION
3
1
GLYCEROLGLYCEROL
4
2
NITRATE IONNITRATE ION
5
3
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303