5EEK: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with trichostatin A

PDB ID: 5EEKDownload
MMDB ID: 141294
PDB Deposition Date: 2015/10/23
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.59  Å
Source Organism:
Similar Structures:
Biological Unit for 5EEK: monomeric; determined by author and by software (PISA)
Molecular Components in 5EEK
Label Count Molecule
Protein (1 molecule)
1
Hdac6 Protein
(Gene symbol: hdac6)
Molecule annotation
Chemicals and Non-standard biopolymers (40 molecules)
1
1
ZINC IONZINC ION
2
2
POTASSIUM IONPOTASSIUM ION
3
1
TRICHOSTATIN ATRICHOSTATIN A
4
26
IODIDE IONIODIDE ION
5
6
AMMONIUM IONAMMONIUM ION
6
1
CHLORIDE IONCHLORIDE ION
7
1
GLYCEROLGLYCEROL
8
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303