5E5H: Succinyl-CoA:acetate CoA-transferase (AarCH6) bound to acetate and degradation products from the acetyl-CoA analogue dethiaacetyl-CoA

PDB ID: 5E5HDownload
MMDB ID: 139297
PDB Deposition Date: 2015/10/8
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.052  Å
Source Organism:
Similar Structures:
Biological Unit for 5E5H: dimeric; determined by author and by software (PISA)
Molecular Components in 5E5H
Label Count Molecule
Proteins (2 molecules)
2
Succinyl-coa:acetate Coa-transferase
Molecule annotation
Chemicals and Non-standard biopolymers (13 molecules)
1
4
CHLORIDE IONCHLORIDE ION
2
2
[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3R)-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-(propylamino)propyl]amino]butyl] hydrogen phosphate[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3R)-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-(propylamino)propyl]amino]butyl] hydrogen phosphate
3
1
ACETYL GROUPACETYL GROUP
4
1
FORMIC ACIDFORMIC ACID
5
4
IMIDAZOLEIMIDAZOLE
6
1
ACETATE IONACETATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303