5DYT: Crystal structure of human butyrylcholinesterase in complex with N-((1-benzylpiperidin-3-yl)methyl)-N-methylnaphthalene-2-sulfonamide

PDB ID: 5DYTDownload
MMDB ID: 143689
PDB Deposition Date: 2015/9/25
Updated in MMDB: 2025/12
Experimental Method:
x-ray diffraction
Resolution: 2.55  Å
Source Organism:
Similar Structures:
Biological Unit for 5DYT: dimeric; determined by author and by software (PISA)
Molecular Components in 5DYT
Label Count Molecule
Proteins (2 molecules)
2
Cholinesterase
(Gene symbol: BCHE)
Molecule annotation
Chemicals and Non-standard biopolymers (44 molecules)
1
21
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
4
alpha-L-fucopyranosealpha-L-fucopyranose
3
2
N-{[(3R)-1-benzylpiperidin-3-yl]methyl}-N-methylnaphthalene-2-sulfonamideN-{[(3R)-1-benzylpiperidin-3-yl]methyl}-N-methylnaphthalene-2-sulfonamide
4
5
GLYCEROLGLYCEROL
5
4
1,2-ETHANEDIOL1,2-ETHANEDIOL
6
6
UNKNOWN ATOM OR ION (Link to PubChem not yet available)UNKNOWN ATOM OR ION
7
1
beta-L-fucopyranosebeta-L-fucopyranose
8
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303