5DYF: The crystal structure of Aminopeptidase N in complex with N-benzyl-1,2-diaminoethylphosphonic acid

PDB ID: 5DYFDownload
MMDB ID: 134465
PDB Deposition Date: 2015/9/24
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.854  Å
Source Organism:
Similar Structures:
Biological Unit for 5DYF: monomeric; determined by author and by software (PISA)
Molecular Components in 5DYF
Label Count Molecule
Protein (1 molecule)
1
Aminopeptidase N
(Gene symbol: pepN)
Molecule annotation
Chemicals and Non-standard biopolymers (17 molecules)
1
1
ZINC IONZINC ION
2
10
SULFATE IONSULFATE ION
3
1
[(1R)-1-amino-2-(benzylamino)ethyl]phosphonic acid[(1R)-1-amino-2-(benzylamino)ethyl]phosphonic acid
4
4
GLYCEROLGLYCEROL
5
1
IMIDAZOLEIMIDAZOLE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303