5DVP: Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with Doripenem adduct

PDB ID: 5DVPDownload
MMDB ID: 143499
PDB Deposition Date: 2015/9/21
Updated in MMDB: 2016/12
Experimental Method:
x-ray diffraction
Resolution: 2.18  Å
Source Organism:
Similar Structures:
Biological Unit for 5DVP: monomeric; determined by author
Molecular Components in 5DVP
Label Count Molecule
Protein (1 molecule)
1
L,d-transpeptidase 2
(Gene symbol: ldtB)
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
(2S,3R,4S)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-4-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-3,4-dihydro-2H-pyrrole-5-carboxylic acid(2S,3R,4S)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-4-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-3,4-dihydro-2H-pyrrole-5-carboxylic acid
2
1
SULFATE IONSULFATE ION
3
1
PHOSPHONOACETALDEHYDEPHOSPHONOACETALDEHYDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303