5DQD: Structure of S55-5 Fab in complex with lipid A carbohydrate backbone

PDB ID: 5DQDDownload
MMDB ID: 137261
PDB Deposition Date: 2015
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.94  Å
Source Organism:
Similar Structures:
Biological Unit for 5DQD: dimeric; determined by author and by software (PISA)
Molecular Components in 5DQD
Label Count Molecule
Proteins (2 molecules)
1
S55-5 FAB (Igg1 Kappa) Light Chain
Molecule annotation
1
S55-5 FAB (Igg1) Heavy Chain
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
1
2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose
2
1
2-acetamido-2-deoxy-4-O-phosphono-beta-D-glucopyranose2-acetamido-2-deoxy-4-O-phosphono-beta-D-glucopyranose
3
2
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303