5DNF: Crystal structure of CC chemokine 5 (CCL5) oligomer in complex with heparin

PDB ID: 5DNFDownload
MMDB ID: 138356
PDB Deposition Date: 2015/9/10
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 2.549  Å
Source Organism:
Similar Structures:
Biological Unit for 5DNF: nonameric; determined by author
Molecular Components in 5DNF
Label Count Molecule
Proteins (9 molecules)
9
C-C Motif Chemokine 5
(Gene symbol: CCL5)
Molecule annotation
Chemicals and Non-standard biopolymers (46 molecules)
1
6
2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose
2
3
2-O-sulfo-alpha-L-idopyranuronic acid2-O-sulfo-alpha-L-idopyranuronic acid
3
6
alpha-D-galactopyranosealpha-D-galactopyranose
4
5
beta-D-glucopyranosebeta-D-glucopyranose
5
5
SULFATE IONSULFATE ION
6
20
CHLORIDE IONCHLORIDE ION
7
1
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303