5DKW: Ternary crystal structure of polymerase lambda with a GA mispair at the primer terminus with Ca2+ in the active

PDB ID: 5DKWDownload
MMDB ID: 136734
PDB Deposition Date: 2015/9/4
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.689  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5DKW: tetrameric; determined by author and by software (PISA)
Molecular Components in 5DKW
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Lambda
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(p*gp*cp*cp*g)-3')
Molecule annotation
1
DNA (5'-d(*cp*ap*gp*tp*ap*c)-3')
Molecule annotation
1
DNA (5'-d(*cp*gp*gp*cp*gp*gp*tp*ap*cp*tp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
2
2
CALCIUM IONCALCIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303