5DJQ: The structure of CBB3 cytochrome oxidase

PDB ID: 5DJQDownload
MMDB ID: 135482
PDB Deposition Date: 2015/9/2
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 3.2  Å
Source Organism:
Stutzerimonas stutzeri ATCC 14405 = CCUG 16156▼
Similar Structures:
Biological Unit for 5DJQ: tetrameric; determined by author and by software (PISA)
Molecular Components in 5DJQ
Label Count Molecule
Proteins (4 molecules)
1
Cbb3-type Cytochrome C Oxidase Subunit Ccon1
Molecule annotation
1
Cbb3-type Cytochrome C Oxidase Subunit II
Molecule annotation
1
Cbb3-type Cytochrome C Oxidase Subunit Ccop1
Molecule annotation
1
Putative Uncharacterized Protein
Molecule annotation
Chemicals and Non-standard biopolymers (13 molecules)
1
2
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
2
1
COPPER (II) IONCOPPER (II) ION
3
2
CALCIUM IONCALCIUM ION
4
1
HYDROGEN PEROXIDEHYDROGEN PEROXIDE
5
1
PHOSPHATE IONPHOSPHATE ION
6
4
HEME CHEME C
7
2
HEXACYANOFERRATE(3-)HEXACYANOFERRATE(3-)
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303