5DGH: Crystal structure of the catalytic domain of human diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2) in complex with AMP-PNP and 5-(PCP)-IP5

PDB ID: 5DGHDownload
MMDB ID: 142074
PDB Deposition Date: 2015/8/27
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 2.1  Å
Source Organism:
Similar Structures:
Biological Unit for 5DGH: monomeric; determined by author and by software (PISA)
Molecular Components in 5DGH
Label Count Molecule
Protein (1 molecule)
1
Inositol Hexakisphosphate and Diphosphoinositol-pentakisphosphate Kinase 2
(Gene symbol: PPIP5K2)
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
1
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTERPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
1
Methylenebisphosphonate inositol pentakisphosphateMethylenebisphosphonate inositol pentakisphosphate
3
5
MAGNESIUM IONMAGNESIUM ION
4
6
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
2
ACETATE IONACETATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303