5DFF: Human APE1 product complex

PDB ID: 5DFFDownload
MMDB ID: 133376
PDB Deposition Date: 2015/8/26
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 1.57  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5DFF: tetrameric; determined by author and by software (PISA)
Molecular Components in 5DFF
Label Count Molecule
Protein (1 molecule)
1
DNA-(apurinic or Apyrimidinic Site) Lyase
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(p*(3dr)p*cp*gp*ap*cp*gp*gp*ap*tp*cp*c)-3')
Molecule annotation
1
DNA (5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*c)-3')
Molecule annotation
1
DNA (5'-d(*gp*gp*ap*tp*cp*cp*gp*tp*cp*gp*gp*gp*cp*gp*cp*ap*tp*cp*ap*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
2
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
3
1
CHLORIDE IONCHLORIDE ION
4
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303