5D9Q: Crystal Structure of the BG505 SOSIP gp140 HIV-1 Env trimer in Complex with the Broadly Neutralizing Fab PGT122 and scFv NIH45-46

PDB ID: 5D9QDownload
MMDB ID: 142408
PDB Deposition Date: 2015/8/18
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 4.4  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 5D9Q: 15-meric; determined by author and by software (PISA)
Molecular Components in 5D9Q
Label Count Molecule
Proteins (15 molecules)
3
Envelope Glycoprotein Gp120
Molecule annotation
3
Envelope Glycoprotein Gp41
Molecule annotation
3
Pgt122 Light Chain,ig Lambda-3 Chain C Regions
Molecule annotation
3
Pgt122 Heavy Chain,igg H Chain
Molecule annotation
3
Nih45-46 Single Chain FV
Molecule annotation
Chemicals and Non-standard biopolymers (216 molecules)
1
102
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
24
beta-D-mannopyranosebeta-D-mannopyranose
3
90
alpha-D-mannopyranosealpha-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303