5D9I: SV40 Large T antigen origin binding domain bound to artificial DNA fork

PDB ID: 5D9IDownload
MMDB ID: 132541
PDB Deposition Date: 2015/8/18
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.7  Å
Source Organism:
Betapolyomavirus macacae▼
Similar Structures:
Biological Unit for 5D9I: tetrameric; determined by author and by software (PISA)
Molecular Components in 5D9I
Label Count Molecule
Proteins (2 molecules)
2
Large T Antigen
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*gp*ap*gp*gp*ap*gp*gp*cp*tp*tp*tp*tp*tp*tp*gp*gp*ap*gp*gp*cp*c)-3')
Molecule annotation
1
DNA (5'-d(*ap*cp*tp*cp*cp*tp*cp*cp*gp*ap*ap*ap*ap*ap*ap*cp*cp*tp*cp*cp*gp*gp*a)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
2
2
CALCIUM IONCALCIUM ION
3
1
ACETATE IONACETATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303