5D49: Structural Basis for a New Templated Activity by Terminal Deoxynucleotidyl Transferase: Implications for V(D)J Recombination

PDB ID: 5D49Download
MMDB ID: 141277
PDB Deposition Date: 2015/8/7
Updated in MMDB: 2016/09
Experimental Method:
x-ray diffraction
Resolution: 1.99  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5D49: pentameric; determined by author and by software (PISA)
Molecular Components in 5D49
Label Count Molecule
Protein (1 molecule)
1
Terminal Deoxynucleotidyltransferase
Molecule annotation
Nucleotides(4 molecules)
1
DNA (5'-d(*ap*ap*ap*ap*ap*c)-3')
Molecule annotation
2
DNA (5'-d(*tp*tp*tp*tp*tp*gp*gp*c)-3')
Molecule annotation
1
DNA (5'-d(*ap*ap*ap*ap*a)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
1
SODIUM IONSODIUM ION
3
2
SULFATE IONSULFATE ION
4
3
ACETATE IONACETATE ION
5
1
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303