5D46: Structural Basis for a New Templated Activity by Terminal Deoxynucleotidyl Transferase: Implications for V(D)J Recombination

PDB ID: 5D46Download
MMDB ID: 141276
PDB Deposition Date: 2015/8/7
Updated in MMDB: 2016/09
Experimental Method:
x-ray diffraction
Resolution: 2.8  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5D46: pentameric; determined by author and by software (PISA)
Molecular Components in 5D46
Label Count Molecule
Protein (1 molecule)
1
Terminal Deoxynucleotidyltransferase
Molecule annotation
Nucleotides(4 molecules)
2
DNA (5'-d(*ap*ap*ap*ap*ap*a)-3')
Molecule annotation
2
DNA (5'-d(*tp*tp*tp*tp*tp*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
1
SODIUM IONSODIUM ION
3
1
PYROPHOSPHATE 2-PYROPHOSPHATE 2-
4
2
SULFATE IONSULFATE ION
5
3
ACETATE IONACETATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303