5D0B: Crystal structure of epoxyqueuosine reductase with a tRNA-TYR epoxyqueuosine-modified tRNA stem loop

PDB ID: 5D0BDownload
MMDB ID: 143452
PDB Deposition Date: 2015/8/3
Updated in MMDB: 2016/12
Experimental Method:
x-ray diffraction
Resolution: 2.645  Å
Source Organism:
Bacillus subtilis subsp. subtilis str. 168▼
Similar Structures:
Biological Unit for 5D0B: dimeric; determined by author and by software (PISA)
Molecular Components in 5D0B
Label Count Molecule
Protein (1 molecule)
1
Epoxyqueuosine Reductase
Molecule annotation
Nucleotide(1 molecule)
1
RNA (5'-d(*gp*cp*ap*gp*ap*cp*up*(56b)p*up*ap*ap*ap*up*cp*up*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
2
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
2
2
COBALAMINCOBALAMIN
3
1
PHOSPHATE IONPHOSPHATE ION
4
1
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303