5CX8: Structure of RagB, a major immunodominant virulence factor of Porphyromonas gingivalis

PDB ID: 5CX8Download
MMDB ID: 133572
PDB Deposition Date: 2015/7/28
Updated in MMDB: 2016/11
Experimental Method:
x-ray diffraction
Resolution: 2.4  Å
Source Organism:
Similar Structures:
Biological Unit for 5CX8: dimeric; determined by author and by software (PISA)
Molecular Components in 5CX8
Label Count Molecule
Proteins (2 molecules)
2
Lipoprotein Ragb
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
3-deoxy-beta-D-glucopyranose3-deoxy-beta-D-glucopyranose
2
1
6-O-phosphono-D-tagatose6-O-phosphono-D-tagatose
3
3
GLYCEROLGLYCEROL
4
2
ACETATE IONACETATE ION
5
1
3-deoxy-5-O-phosphono-beta-D-ribofuranose3-deoxy-5-O-phosphono-beta-D-ribofuranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303