5CU3: Crystal Structure Of Ck2alpha With Compound 10 Bound

The development of selective inhibitors of protein kinases is challenging because of the significant conservation of the ATP binding site. Here, we describe a new mechanism by which the protein kinase CK2alpha can be selectively inhibited using features outside the ATP site. We have identified a new binding site for small molecules on CK2alpha adjacent to the ATP site and behind the alphaD loop, termed the alphaD pocket. An elaborated fragment anchored in this site has been linked with a low affinity fragment binding in the ATP site, creating a novel and selective inhibitor (CAM4066) that binds CK2alpha with a Kd of 320 nM and shows significantly improved selectivity compared to other CK2alpha inhibitors. CAM4066 shows target engagement in several cell lines and similar potency to clinical trial candidate CX4945. Our data demonstrate that targeting a poorly conserved, cryptic pocket allows inhibition of CK2alpha via a novel mechanism, enabling the development of a new generation of selective CK2alpha inhibitors.
PDB ID: 5CU3Download
MMDB ID: 141264
PDB Deposition Date: 2015/7/24
Updated in MMDB: 2016/08
Experimental Method:
x-ray diffraction
Resolution: 1.79  Å
Source Organism:
Similar Structures:
Biological Unit for 5CU3: dimeric; determined by author and by software (PISA)
Molecular Components in 5CU3
Label Count Molecule
Proteins (2 molecules)
Casein Kinase II Subunit Alpha(Gene symbol: CSNK2A1)
Molecule annotation
Chemicals (10 molecules)
* Click molecule labels to explore molecular sequence information.

Citing MMDB