5CMX: X-ray structure of the complex between human alpha thrombin and a duplex/quadruplex 31-mer DNA aptamer

PDB ID: 5CMXDownload
MMDB ID: 135442
PDB Deposition Date: 2015/7/17
Updated in MMDB: 2016/12
Experimental Method:
x-ray diffraction
Resolution: 2.98  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5CMX: trimeric; determined by author and by software (PISA)
Molecular Components in 5CMX
Label Count Molecule
Proteins (2 molecules)
1
Alpha Thrombin-light Chain
Molecule annotation
1
Thrombin Heavy Chain
Molecule annotation
Nucleotide(1 molecule)
1
Re31
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
1
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamideD-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
2
1
POTASSIUM IONPOTASSIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303