5C51: Probing the Structural and Molecular Basis of Nucleotide Selectivity by Human Mitochondrial DNA Polymerase gamma

PDB ID: 5C51Download
MMDB ID: 139116
PDB Deposition Date: 2015/6/19
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 3.426  Å
Source Organism:
Virus Chimp162▼
Similar Structures:
Biological Unit for 5C51: pentameric; determined by author and by software (PISA)
Molecular Components in 5C51
Label Count Molecule
Proteins (3 molecules)
1
DNA Polymerase Subunit Gamma-1
Molecule annotation
2
DNA Polymerase Subunit Gamma-2, Mitochondrial
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*(ad)p*ap*ap*ap*cp*gp*ap*gp*gp*gp*cp*cp*ap*gp*tp*gp*cp*cp*gp*tp*ap*c)-3')
Molecule annotation
1
DNA
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
2
MAGNESIUM IONMAGNESIUM ION
2
1
[[(2R,5S)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate[[(2R,5S)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303