5C1P: Crystal structure of ADP and D-alanyl-D-alanine complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis

PDB ID: 5C1PDownload
MMDB ID: 136983
PDB Deposition Date: 2015/6/15
Updated in MMDB: 2024/03
Experimental Method:
x-ray diffraction
Resolution: 2.4  Å
Source Organism:
Similar Structures:
Biological Unit for 5C1P: dimeric; determined by author and by software (PISA)
Molecular Components in 5C1P
Label Count Molecule
Proteins (2 molecules)
2
D-alanine--d-alanine Ligase
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
2
SODIUM IONSODIUM ION
2
4
GLYCEROLGLYCEROL
3
1
ADENOSINE-5'-DIPHOSPHATEADENOSINE-5'-DIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303