5BPH: Crystal structure of AMP complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis

PDB ID: 5BPHDownload
MMDB ID: 136968
PDB Deposition Date: 2015/5/28
Updated in MMDB: 2024/03
Experimental Method:
x-ray diffraction
Resolution: 1.7  Å
Source Organism:
Similar Structures:
Biological Unit for 5BPH: dimeric; determined by author
Molecular Components in 5BPH
Label Count Molecule
Proteins (2 molecules)
2
D-alanine--d-alanine Ligase
Molecule annotation
Chemicals and Non-standard biopolymers (12 molecules)
1
2
ADENOSINE MONOPHOSPHATEADENOSINE MONOPHOSPHATE
2
3
SODIUM IONSODIUM ION
3
3
ACETATE IONACETATE ION
4
4
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303