5BPF: Crystal structure of ADP complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis

PDB ID: 5BPFDownload
MMDB ID: 136967
PDB Deposition Date: 2015/5/28
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.28  Å
Source Organism:
Similar Structures:
Biological Unit for 5BPF: dimeric; determined by author and by software (PISA)
Molecular Components in 5BPF
Label Count Molecule
Proteins (2 molecules)
2
D-alanine-d-alanine Ligase
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
3
SODIUM IONSODIUM ION
2
2
GLYCEROLGLYCEROL
3
1
ADENOSINE-5'-DIPHOSPHATEADENOSINE-5'-DIPHOSPHATE
4
2
ACETATE IONACETATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303