5AY8: Crystal structure of human nucleosome containing H3.Y

PDB ID: 5AY8Download
MMDB ID: 138068
PDB Deposition Date: 2015/8/10
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.8  Å
Source Organism:
Similar Structures:
Biological Unit for 5AY8: decameric; determined by author and by software (PISA)
Molecular Components in 5AY8
Label Count Molecule
Proteins (8 molecules)
2
H3.y
Molecule annotation
2
Histone H4
(Gene symbol: H4C9)
Molecule annotation
2
Histone H2A Type 1-b/e
(Gene symbol: H2AC8)
Molecule annotation
2
Histone H2B Type 1-J
(Gene symbol: H2BC11)
Molecule annotation
Nucleotides(2 molecules)
2
DNA (146-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
8
MANGANESE (II) IONMANGANESE (II) ION
2
2
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303