5AKN: THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA NICKED IN THE non-CODING STRAND B AND IN THE PRESENCE OF 2MM MN

PDB ID: 5AKNDownload
MMDB ID: 130211
PDB Deposition Date: 2015/3/4
Updated in MMDB: 2015/08
Experimental Method:
x-ray diffraction
Resolution: 2.75  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5AKN: pentameric; determined by author and by software (PISA)
Molecular Components in 5AKN
Label Count Molecule
Protein (1 molecule)
1
Homing Endonuclease I-dmoi
Molecule annotation
Nucleotides(4 molecules)
1
5'-d(*gp*cp*cp*tp*tp*gp*cp*cp*gp*gp*gp*tp*ap*ap)-3'
Molecule annotation
1
5'-d(*gp*tp*tp*cp*cp*gp*gp*cp*gp*cp*gp)-3
Molecule annotation
1
D(*cp*gp*cp*gp*cp*cp*gp*gp*ap*ap*cp*tp*tp*ap*cp)-3'
Molecule annotation
1
5'-d(*cp*cp*gp*gp*cp*ap*ap*gp*gp*cp)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
2
MANGANESE (II) IONMANGANESE (II) ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303