5AHJ: Yeast 20S proteasome in complex with Macyranone A

PDB ID: 5AHJDownload
MMDB ID: 127220
PDB Deposition Date: 2015/2/6
Updated in MMDB: 2022/11
Experimental Method:
x-ray diffraction
Resolution: 2.8  Å
Source Organism:
Similar Structures:
Biological Unit for 5AHJ: 28-meric; determined by software (PISA)
Molecular Components in 5AHJ
Label Count Molecule
Proteins (28 molecules)
2
Proteasome Subunit Alpha Type-2
(Gene symbol: PRE8)
Molecule annotation
2
Proteasome Subunit Alpha Type-3
(Gene symbol: PRE9)
Molecule annotation
2
Proteasome Subunit Alpha Type-4
(Gene symbol: PRE6)
Molecule annotation
2
Proteasome Subunit Alpha Type-5
(Gene symbol: PUP2)
Molecule annotation
2
Proteasome Subunit Alpha Type-6
(Gene symbol: PRE5)
Molecule annotation
2
Probable Proteasome Subunit Alpha Type-7
(Gene symbol: PRE10)
Molecule annotation
2
Proteasome Subunit Alpha Type-1
(Gene symbol: SCL1)
Molecule annotation
2
Proteasome Subunit Beta Type-2
(Gene symbol: PUP1)
Molecule annotation
2
Proteasome Subunit Beta Type-3
(Gene symbol: PUP3)
Molecule annotation
2
Proteasome Subunit Beta Type-4
(Gene symbol: PRE1)
Molecule annotation
2
Proteasome Subunit Beta Type-5
(Gene symbol: PRE2)
Molecule annotation
2
Proteasome Subunit Beta Type-6
(Gene symbol: PRE7)
Molecule annotation
2
Proteasome Subunit Beta Type-7
(Gene symbol: PRE4)
Molecule annotation
2
20S Proteasome
(Gene symbol: PRE3)
Molecule annotation
Chemicals and Non-standard biopolymers (19 molecules)
1
7
MAGNESIUM ION (Link to PubChem not yet available)MAGNESIUM ION
2
4
CHLORIDE ION (Link to PubChem not yet available)CHLORIDE ION
3
6
N-[(2S)-3-{[(1S)-1-carboxy-2-phenylethyl]amino}-2-methyl-3-oxopropanoyl]-L-threonyl-N-[(3S,4S)-1,3-dihydroxy-6-methylheptan-4-yl]-L-allothreoninamide (Link to PubChem not yet available)N-[(2S)-3-{[(1S)-1-carboxy-2-phenylethyl]amino}-2-methyl-3-oxopropanoyl]-L-threonyl-N-[(3S,4S)-1,3-dihydroxy-6-methylheptan-4-yl]-L-allothreoninamide
4
2
2-(N-MORPHOLINO)-ETHANESULFONIC ACID (Link to PubChem not yet available)2-(N-MORPHOLINO)-ETHANESULFONIC ACID
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303