5AFZ: Thrombin in complex with (2R)-2-(benzylsulfonylamino)-N-(2-((4- carbamimidoylphenyl)methylamino)-2-oxo-propyl)-3-phenyl-propanamide

PDB ID: 5AFZDownload
MMDB ID: 132097
PDB Deposition Date: 2015/1/27
Updated in MMDB: 2022/12
Experimental Method:
x-ray diffraction
Resolution: 1.53  Å
Source Organism:
Homo sapiens▼
Similar Structures:
Biological Unit for 5AFZ: trimeric; determined by author and by software (PISA)
Molecular Components in 5AFZ
Label Count Molecule
Proteins (3 molecules)
1
Prothrombin
Molecule annotation
1
Hirudin-2
Molecule annotation
1
Prothrombin
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
2
SODIUM IONSODIUM ION
2
1
N-(BENZYLSULFONYL)-D-PHENYLALANYL-N-(4-CARBAMIMIDOYLBENZYL)GLYCINAMIDEN-(BENZYLSULFONYL)-D-PHENYLALANYL-N-(4-CARBAMIMIDOYLBENZYL)GLYCINAMIDE
3
1
PHOSPHATE IONPHOSPHATE ION
4
1
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
5
1
Molecule information is not available.
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303