5AF9: Thrombin in complex with 4-Methoxy-N-(2-pyridinyl)benzamide

PDB ID: 5AF9Download
MMDB ID: 132095
PDB Deposition Date: 2015/1/20
Updated in MMDB: 2018/11
Experimental Method:
x-ray diffraction
Resolution: 1.18  Å
Source Organism:
Homo sapiens▼
Similar Structures:
Biological Unit for 5AF9: trimeric; determined by author and by software (PISA)
Molecular Components in 5AF9
Label Count Molecule
Proteins (3 molecules)
1
Thrombin Heavy Chain
Molecule annotation
1
Hirudin Variant-2
Molecule annotation
1
Thrombin Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (11 molecules)
1
1
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
2
SODIUM IONSODIUM ION
3
2
DIMETHYL SULFOXIDEDIMETHYL SULFOXIDE
4
1
4-methoxy-N-(pyridin-2-yl)benzamide4-methoxy-N-(pyridin-2-yl)benzamide
5
1
PHOSPHATE IONPHOSPHATE ION
6
3
GLYCEROLGLYCEROL
7
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303