5A3W: Crystal structure of human PLU-1 (JARID1B) in complex with Pyridine-2, 6-dicarboxylic Acid (PDCA)

PDB ID: 5A3WDownload
MMDB ID: 130203
PDB Deposition Date: 2015/6/3
Updated in MMDB: 2016/07
Experimental Method:
x-ray diffraction
Resolution: 2  Å
Source Organism:
Similar Structures:
Biological Unit for 5A3W: monomeric; determined by author and by software (PISA)
Molecular Components in 5A3W
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 5B
(Gene symbol: KDM5B)
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
2
ZINC IONZINC ION
2
1
SODIUM IONSODIUM ION
3
1
PYRIDINE-2,4-DICARBOXYLIC ACIDPYRIDINE-2,4-DICARBOXYLIC ACID
4
1
MANGANESE (II) IONMANGANESE (II) ION
5
1
PHOSPHATE IONPHOSPHATE ION
6
1
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
7
3
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303