4YTM: Crystal structure of Mitochondrial rhodoquinol-fumarate reductase from Ascaris suum with N-biphenyl-3-yl-2-(trifluoromethyl)benzamide

PDB ID: 4YTMDownload
MMDB ID: 131469
PDB Deposition Date: 2015/3/18
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 3.4  Å
Source Organism:
Similar Structures:
Biological Unit for 4YTM: tetrameric; determined by author and by software (PISA)
Molecular Components in 4YTM
Label Count Molecule
Proteins (4 molecules)
1
Succinate Dehydrogenase Flavoprotein
Molecule annotation
1
Succinate Dehydrogenase [ubiquinone] Iron-sulfur Subunit, Mitochondrial
Molecule annotation
1
Cytochrome B-large Subunit
Molecule annotation
1
Succinate Dehydrogenase [ubiquinone] Cytochrome B Small Subunit, Mitochondrial
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
MALONATE IONMALONATE ION
2
1
FLAVIN-ADENINE DINUCLEOTIDEFLAVIN-ADENINE DINUCLEOTIDE
3
1
FE2/S2 (INORGANIC) CLUSTERFE2/S2 (INORGANIC) CLUSTER
4
1
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
5
1
FE3-S4 CLUSTERFE3-S4 CLUSTER
6
1
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
7
1
N-biphenyl-3-yl-2-(trifluoromethyl)benzamideN-biphenyl-3-yl-2-(trifluoromethyl)benzamide
8
1
L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINEL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303