4YTB: Crystal structure of Porphyromonas gingivalis peptidylarginine deiminase (PPAD) in complex with dipeptide Asp-Gln

PDB ID: 4YTBDownload
MMDB ID: 130557
PDB Deposition Date: 2015/3/17
Updated in MMDB: 2015/07
Experimental Method:
x-ray diffraction
Resolution: 1.4  Å
Source Organism:
Similar Structures:
Biological Unit for 4YTB: monomeric; determined by software (PISA)
Molecular Components in 4YTB
Label Count Molecule
Protein (1 molecule)
1
Peptidylarginine Deiminase
(Gene symbol: PGN_RS04285)
Molecule annotation
Chemicals and Non-standard biopolymers (14 molecules)
1
1
SODIUM IONSODIUM ION
2
1
ASPARTIC ACIDASPARTIC ACID
3
1
GLUTAMINEGLUTAMINE
4
3
GLYCEROLGLYCEROL
5
5
PHOSPHATE IONPHOSPHATE ION
6
1
IMIDAZOLEIMIDAZOLE
7
1
CHLORIDE IONCHLORIDE ION
8
1
AZIDE IONAZIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303