4YQ5: Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds

PDB ID: 4YQ5Download
MMDB ID: 137419
PDB Deposition Date: 2015/3/13
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.76  Å
Source Organism:
Similar Structures:
Biological Unit for 4YQ5: dimeric; determined by author and by software (PISA)
Molecular Components in 4YQ5
Label Count Molecule
Proteins (2 molecules)
2
tRNA (Guanine-n(1)-)-methyltransferase
(Gene symbol: trmD)
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
2
6-{[3-(dimethylamino)benzyl]amino}pyridine-3-carboxamide6-{[3-(dimethylamino)benzyl]amino}pyridine-3-carboxamide
2
2
CITRATE ANIONCITRATE ANION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303