4YDK: Crystal structure of broadly and potently neutralizing antibody C38-VRC16.01 in complex with HIV-1 clade AE strain 93TH057 gp120

PDB ID: 4YDKDownload
MMDB ID: 129773
PDB Deposition Date: 2015/2/22
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 2.051  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 4YDK: trimeric; determined by author
Molecular Components in 4YDK
Label Count Molecule
Proteins (3 molecules)
1
Envelope Glycoprotein Gp160,envelope Glycoprotein Gp160
Molecule annotation
1
Heavy Chain of Antibody C38-vrc16.01
Molecule annotation
1
Light Chain of Antibody C38-vrc16.01
Molecule annotation
Chemicals and Non-standard biopolymers (31 molecules)
1
10
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
7
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
3
13
GLYCEROLGLYCEROL
4
1
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303