4YDI: Crystal structure of broad and potently neutralizing VRC01-class antibody Z258-VRC27.01, isolated from human donor Z258, in complex with HIV-1 gp120 from clade A strain Q23.17

PDB ID: 4YDIDownload
MMDB ID: 129771
PDB Deposition Date: 2015/2/22
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 3.452  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 4YDI: trimeric; determined by author
Molecular Components in 4YDI
Label Count Molecule
Proteins (3 molecules)
1
Envelope Glycoprotein Gp160
Molecule annotation
1
Heavy Chain of Antibody Z258-vrc27.01
Molecule annotation
1
Light Chain of Antibody Z258-vrc27.01
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
13
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
4
SULFATE IONSULFATE ION
3
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303