4YD3: Endothiapepsin in complex with fragment 224

PDB ID: 4YD3Download
MMDB ID: 136890
PDB Deposition Date: 2015/2/20
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 1.248  Å
Source Organism:
Similar Structures:
Biological Unit for 4YD3: monomeric; determined by author and by software (PISA)
Molecular Components in 4YD3
Label Count Molecule
Protein (1 molecule)
1
Endothiapepsin
Molecule annotation
Chemicals and Non-standard biopolymers (12 molecules)
1
2
2-(1H-indol-3-yl)-N-[(1-methyl-1H-pyrrol-2-yl)methyl]ethanamine2-(1H-indol-3-yl)-N-[(1-methyl-1H-pyrrol-2-yl)methyl]ethanamine
2
1
DIMETHYL SULFOXIDEDIMETHYL SULFOXIDE
3
5
GLYCEROLGLYCEROL
4
2
ACETATE IONACETATE ION
5
1
PENTAETHYLENE GLYCOLPENTAETHYLENE GLYCOL
6
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303