4YD2: Nicked complex of human DNA Polymerase Mu with 2-nt gapped DNA substrate

PDB ID: 4YD2Download
MMDB ID: 131457
PDB Deposition Date: 2015/2/20
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 2.471  Å
Source Organism:
Similar Structures:
Biological Unit for 4YD2: tetrameric; determined by author and by software (PISA)
Molecular Components in 4YD2
Label Count Molecule
Protein (1 molecule)
1
DNA-directed Dna/rna Polymerase MU
(Gene symbol: POLM)
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(*cp*gp*gp*cp*ap*ap*t)-3')
Molecule annotation
1
DNA (5'-d(*cp*gp*tp*ap*t)-3')
Molecule annotation
1
DNA (5'-d(p*gp*cp*cp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
3
SODIUM IONSODIUM ION
2
3
CHLORIDE IONCHLORIDE ION
3
1
PYROPHOSPHATEPYROPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303