4YB0: 3',3'-cgamp Riboswitch Bound With C-di-gmp

PDB ID: 4YB0Download
MMDB ID: 128670
PDB Deposition Date: 2015/2/18
Updated in MMDB: 2015/04
Experimental Method:
x-ray diffraction
Resolution: 2.12  Å
Source Organism:
Biological Unit for 4YB0: monomeric; determined by author and by software (PISA)
Molecular Components in 4YB0
Label Count Molecule
Nucleotide(1 molecule)
1
RNA (84-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
1
Guanosine-5'-DiphosphateGuanosine-5'-Diphosphate
2
1
9,9'-[(2r,3r,3as,5s,7ar,9r,10r,10as,12s,14ar)-3,5,10,12-Tetrahydroxy-5,12-Dioxidooctahydro-2h,7h-Difuro[3,2-D:3',2'-J][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-Diyl]bis(2-Amino-1,9-Dihydro-6h-Purin-6-One)9,9'-[(2r,3r,3as,5s,7ar,9r,10r,10as,12s,14ar)-3,5,10,12-Tetrahydroxy-5,12-Dioxidooctahydro-2h,7h-Difuro[3,2-D:3',2'-J][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-Diyl]bis(2-Amino-1,9-Dihydro-6h-Purin-6-One)
3
3
Magnesium IonMagnesium Ion
4
2
Potassium IonPotassium Ion
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303