4Y8U: Yeast 20S proteasome beta2-H116D mutant in complex with Ac-PAD-ep

PDB ID: 4Y8UDownload
MMDB ID: 130130
PDB Deposition Date: 2015/2/16
Updated in MMDB: 2022/11
Experimental Method:
x-ray diffraction
Resolution: 2.9  Å
Source Organism:
Similar Structures:
Biological Unit for 4Y8U: 30-meric; determined by author
Molecular Components in 4Y8U
Label Count Molecule
Proteins (28 molecules)
2
Proteasome Subunit Alpha Type-2
(Gene symbol: PRE8)
Molecule annotation
2
Proteasome Subunit Alpha Type-3
(Gene symbol: PRE9)
Molecule annotation
2
Proteasome Subunit Alpha Type-4
(Gene symbol: PRE6)
Molecule annotation
2
Proteasome Subunit Alpha Type-5
(Gene symbol: PUP2)
Molecule annotation
2
Proteasome Subunit Alpha Type-6
(Gene symbol: PRE5)
Molecule annotation
2
Probable Proteasome Subunit Alpha Type-7
(Gene symbol: PRE10)
Molecule annotation
2
Proteasome Subunit Alpha Type-1
(Gene symbol: SCL1)
Molecule annotation
2
Proteasome Subunit Beta Type-2
(Gene symbol: PUP1)
Molecule annotation
2
Proteasome Subunit Beta Type-3
(Gene symbol: PUP3)
Molecule annotation
2
Proteasome Subunit Beta Type-4
(Gene symbol: PRE1)
Molecule annotation
2
Proteasome Subunit Beta Type-5
(Gene symbol: PRE2)
Molecule annotation
2
Proteasome Subunit Beta Type-6
(Gene symbol: PRE7)
Molecule annotation
2
Proteasome Subunit Beta Type-7
(Gene symbol: PRE4)
Molecule annotation
2
Proteasome Subunit Beta Type-1
(Gene symbol: PRE3)
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
12
2
Ac-PAD-ep
1
6
MAGNESIUM IONMAGNESIUM ION
2
1
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303